PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008689-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 348aa    MW: 40555.3 Da    PI: 8.5143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008689-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-2259142189
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            ++Yn YA+e+GF+vr+++s  +++++e + + ++Cs +g+++ ++ +     + r+etrtgC a++++++ ++++w+v ++ leHnH 
  SMil_00008689-RA_Salv  59 NYYNCYATEAGFNVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----HLRKETRTGCPAMMRMRLVDSKRWRVLEVTLEHNHL 141
                            69****************************************99988.....999********************************8 PP

                   FAR1  89 l 89 
                            l
  SMil_00008689-RA_Salv 142 L 142
                            7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1959142IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.656234270IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-4244266IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6245272IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSVEEMSLHT ERTTEEVSCA TLLTNGQNGI LEDNTCEGRK EFVAPAMGME FESYDDAYNY  60
YNCYATEAGF NVRVKNSWFK RNSREKYGAV LCCSSQGFKR VKDVNHLRKE TRTGCPAMMR  120
MRLVDSKRWR VLEVTLEHNH LLGAKIHKSN KKVGSGTKRK LLSNSDTEIQ PIKLYRALLS  180
KVYTRAIFKR FQLEVEEMYS CFSTTQIHVE GPITIFSVKE RVLHEGNRRE IKDFEVLYNR  240
GASEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL LRWKKDYKRF YLHDRGAESS  300
DSSERVQWFN QLYRSALQVV EEGVISLDHY KIALRALEES LDRVHSIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073403.11e-102PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_011073402.11e-102PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_011073401.11e-102PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_011073400.11e-102PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
SwissprotQ9SSQ41e-85FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0A0K8R31e-169A0A0A0K8R3_CUCSA; Uncharacterized protein
STRINGVIT_09s0002g07400.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-87FAR1-related sequence 6